##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index14_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	22806701	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.910765129950185	33.0	31.0	34.0	30.0	34.0
2	32.002504833995935	33.0	31.0	34.0	30.0	34.0
3	32.05319590062587	34.0	31.0	34.0	30.0	34.0
4	35.5161363320368	37.0	35.0	37.0	33.0	37.0
5	35.52161270496772	37.0	35.0	37.0	33.0	37.0
6	35.52471793268128	37.0	35.0	37.0	33.0	37.0
7	35.43699301358842	37.0	35.0	37.0	33.0	37.0
8	35.434519836954934	37.0	35.0	37.0	33.0	37.0
9	36.957341747936276	39.0	37.0	39.0	33.0	39.0
10-14	37.35265323117096	39.2	37.2	39.4	33.0	39.4
15-19	38.41108797804644	40.0	38.0	41.0	33.2	41.0
20-24	38.22765156609016	40.0	38.0	41.0	33.2	41.0
25-29	38.13714100956556	40.0	38.0	41.0	33.0	41.0
30-34	38.03549798806939	40.0	38.0	41.0	33.0	41.0
35-39	37.81327758889811	40.0	37.0	41.0	32.6	41.0
40-44	37.4374949976325	39.6	36.4	41.0	31.4	41.0
45-49	37.01536495786918	39.0	35.4	41.0	30.8	41.0
50-54	36.19735532114005	38.2	34.6	40.0	29.8	40.6
55-59	36.07302069685572	38.0	34.6	40.0	29.4	41.0
60-64	35.55824972669217	37.0	34.0	40.0	28.8	41.0
65-69	35.066643509729886	36.0	34.0	39.4	29.0	41.0
70-74	34.257980731189484	35.0	33.8	38.2	28.4	40.4
75-79	33.38208889571534	35.0	33.0	36.6	27.2	39.0
80-84	32.554620670477505	35.0	33.0	35.6	26.2	37.2
85-89	31.699347389173035	35.0	32.2	35.0	25.0	36.2
90	31.195944428788714	35.0	32.0	35.0	24.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	170.0
11	1851.0
12	5607.0
13	11375.0
14	18333.0
15	25755.0
16	32082.0
17	38287.0
18	44911.0
19	52443.0
20	62875.0
21	73990.0
22	88173.0
23	106770.0
24	131246.0
25	162605.0
26	200433.0
27	248656.0
28	304677.0
29	371967.0
30	458031.0
31	573267.0
32	728049.0
33	944107.0
34	1286605.0
35	1847160.0
36	2850509.0
37	4236171.0
38	4848139.0
39	2954153.0
40	98304.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.766983046834508	12.336838853854596	10.210285496770396	51.6858926025405
2	22.045647443346088	19.137628133278383	35.366661279028754	23.45006314434677
3	25.667155059660246	21.22344863259782	22.57249760295804	30.536898704783894
4	27.652461444972886	27.635150786783928	19.05754373283145	25.654844035411735
5	29.29010603257372	29.875659510932568	21.376361696813078	19.45787275968063
6	24.309825031755707	32.73143894207372	21.630288884711405	21.328447141459165
7	21.48090669905838	18.800183877643057	37.37764396069561	22.341265462602955
8	21.578524984519067	22.18212749677283	28.94559379792188	27.293753720786224
9	21.728636001650134	21.049930899403797	31.303767644801095	25.917665454144974
10-14	24.563454556313964	26.246594102360532	24.626460757365958	24.563490583959542
15-19	24.918609028937052	25.132984209336367	25.074435033440157	24.873971728286424
20-24	24.687975614779884	25.391580568308914	25.416616578828418	24.503827238082785
25-29	24.551354458243022	25.42173147622772	25.3503776215335	24.676536443995758
30-34	24.552024459648315	25.36981326927502	25.3144074021586	24.76375486891806
35-39	24.569237913121718	25.506104771872927	25.27723798152498	24.64741933348037
40-44	24.523718205929963	25.35261075737885	25.41603016024842	24.707640876442767
45-49	24.47505552115009	25.41065277619169	25.34517621992019	24.76911548273803
50-54	24.48522753476787	25.49627674812634	25.394582752671006	24.62391296443478
55-59	24.516257979537997	25.42445854953137	25.347358729797815	24.71192474113282
60-64	24.410761505052143	25.451344791720174	25.461703230628796	24.676190472598886
65-69	24.438074428457988	25.559366127477993	25.46084353576029	24.541715908303726
70-74	24.490989787099156	25.4963406704607	25.379248579456874	24.633420962983266
75-79	24.4586570395491	25.45429744117164	25.454789402126256	24.632256117153002
80-84	24.403371840050962	25.57851280255988	25.473857303917065	24.54425805347209
85-89	24.503858534353355	25.543425772994443	25.385297234481662	24.567418458170543
90	24.22872145908091	25.636572927122604	25.612219716646845	24.52248589714965
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.452875649375
2	45.49571058769286
3	56.20405376444414
4	53.30730548038461
5	48.74797879225435
6	45.63827217321487
7	43.822172161661335
8	48.87227870530529
9	47.64630145579511
10-14	49.126945140273506
15-19	49.792580757223476
20-24	49.19180285286267
25-29	49.227890902238784
30-34	49.31577932856638
35-39	49.21665724660209
40-44	49.23135908237273
45-49	49.24417100388812
50-54	49.109140499202645
55-59	49.228182720670816
60-64	49.086951977651026
65-69	48.97979033676172
70-74	49.124410750082426
75-79	49.0909131567021
80-84	48.94762989352305
85-89	49.0712769925239
90	48.75120735623055
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	14.0
1	15.5
2	16.0
3	21.5
4	37.5
5	58.0
6	76.0
7	104.5
8	138.5
9	171.5
10	192.0
11	248.5
12	345.5
13	466.0
14	671.5
15	995.0
16	1572.5
17	2555.5
18	4211.0
19	7160.0
20	9057.0
21	12043.0
22	19934.5
23	31898.5
24	48244.5
25	70352.5
26	98763.5
27	133786.0
28	171713.0
29	212093.5
30	233979.0
31	256533.0
32	301826.0
33	350974.0
34	405001.5
35	457303.0
36	511394.5
37	571351.5
38	622577.5
39	665691.0
40	688127.0
41	703834.0
42	734082.0
43	760355.0
44	776447.5
45	783637.5
46	783064.0
47	776592.5
48	775851.5
49	776790.0
50	775401.0
51	768646.0
52	760971.0
53	750052.5
54	743515.0
55	743069.0
56	732578.5
57	717523.0
58	694690.0
59	666138.0
60	651947.0
61	634681.0
62	597163.0
63	549820.5
64	494685.0
65	439650.0
66	381569.5
67	320319.5
68	264583.5
69	212806.0
70	186605.0
71	163229.0
72	120622.0
73	85770.5
74	57152.0
75	35069.0
76	20282.0
77	10886.0
78	5289.5
79	2427.0
80	1467.0
81	1099.0
82	538.5
83	283.5
84	176.0
85	116.0
86	85.0
87	51.5
88	32.0
89	28.0
90	26.0
91	28.0
92	23.5
93	13.5
94	8.0
95	7.5
96	7.0
97	3.0
98	2.5
99	3.0
100	2.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.29271660114279574
2	0.22319317467265434
3	0.2810007462280494
4	0.3037002151253704
5	0.2594106004195872
6	0.17162061273131962
7	0.22039136655494362
8	0.2461250314107244
9	0.2288537916992028
10-14	0.20345599304344808
15-19	0.17775214398610303
20-24	0.2046986102900196
25-29	0.036011345963627095
30-34	0.0035647417835661544
35-39	0.0033805853814631056
40-44	0.008805306826270051
45-49	0.01099852188179255
50-54	0.00623237880831603
55-59	0.0029877183903099353
60-64	0.00923588203309194
65-69	0.0042408588598587755
70-74	1.6135608565219492E-4
75-79	5.700079112713408E-5
80-84	0.00279303876522957
85-89	8.401039676891454E-4
90	0.002950887109889326
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.2806701E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.18845691150395
#Duplication Level	Relative count
1	100.0
2	30.56424229288582
3	15.868346905285321
4	9.92352230857355
5	6.8840243159839405
6	4.988079388178469
7	3.8414300605835425
8	3.114840387652104
9	2.6307913015656768
10++	28.602243758450218
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	6071185	3.0382247	4.7922244	2
CCAGG	4798470	2.5980623	5.2271037	1
CCTGG	4775980	2.5747385	6.19386	1
GAAGA	4818565	2.5506644	5.093227	2
CTTCT	4945080	2.498633	5.440926	1
CTGGA	4589675	2.4465098	8.810489	1
TCCAG	4520980	2.3697832	5.73788	2
CTGCT	4474860	2.335497	5.0899343	1
CTCCT	4483880	2.3012555	7.4957743	1
CTGGG	4157630	2.2793207	8.476856	1
CAGGA	4175670	2.2354624	5.591998	1
CCCAG	4114340	2.190574	7.2623706	1
CTTCA	4312130	2.188251	5.6086063	1
CTCCA	4234925	2.1828942	8.133346	1
CAGAA	4040490	2.1032002	5.128257	1
CTCTG	3918660	2.0452077	6.210309	1
CTGGC	3492500	1.8828123	5.400663	1
TGGAA	3521200	1.8558811	5.2027774	2
CTGAA	3559550	1.8448689	5.441423	1
CTCAG	3333870	1.7475301	6.1784606	1
CTTTG	3314475	1.7030716	5.011291	1
CTGGT	3136300	1.6645869	5.147948	1
CTTGG	3067975	1.6283237	5.300287	1
>>END_MODULE
